C0 code coverage information

Generated on Sun May 28 19:14:17 CDT 2006 with rcov 0.4.0

Name Total lines Lines of code Total coverage Code coverage
TOTAL 42131 42131
77.9% 
70.7% 
/tmp/bioruby/lib/bio.rb 230 230
99.6% 
100.0% 
/tmp/bioruby/lib/bio/alignment.rb 1890 1890
74.0% 
58.7% 
/tmp/bioruby/lib/bio/appl/bl2seq/report.rb 334 334
40.4% 
37.1% 
/tmp/bioruby/lib/bio/appl/blast.rb 327 327
73.4% 
48.9% 
/tmp/bioruby/lib/bio/appl/blast/format0.rb 1392 1392
51.1% 
35.1% 
/tmp/bioruby/lib/bio/appl/blast/format8.rb 95 95
32.6% 
10.3% 
/tmp/bioruby/lib/bio/appl/blast/report.rb 652 652
31.6% 
47.3% 
/tmp/bioruby/lib/bio/appl/blast/rexml.rb 151 151
26.5% 
9.6% 
/tmp/bioruby/lib/bio/appl/blast/xmlparser.rb 229 229
92.6% 
94.4% 
/tmp/bioruby/lib/bio/appl/fasta.rb 262 262
37.0% 
36.6% 
/tmp/bioruby/lib/bio/appl/genscan/report.rb 552 552
68.3% 
70.4% 
/tmp/bioruby/lib/bio/appl/hmmer.rb 163 163
73.6% 
36.0% 
/tmp/bioruby/lib/bio/appl/hmmer/report.rb 701 701
84.6% 
75.2% 
/tmp/bioruby/lib/bio/appl/pts1.rb 258 258
93.8% 
88.9% 
/tmp/bioruby/lib/bio/appl/sosui/report.rb 151 151
67.5% 
55.0% 
/tmp/bioruby/lib/bio/appl/targetp/report.rb 267 267
61.8% 
66.2% 
/tmp/bioruby/lib/bio/appl/tmhmm/report.rb 222 222
71.2% 
59.6% 
/tmp/bioruby/lib/bio/command.rb 216 216
72.2% 
52.4% 
/tmp/bioruby/lib/bio/data/aa.rb 336 336
72.3% 
69.8% 
/tmp/bioruby/lib/bio/data/codontable.rb 722 722
86.1% 
84.8% 
/tmp/bioruby/lib/bio/data/na.rb 208 208
87.0% 
84.2% 
/tmp/bioruby/lib/bio/db.rb 314 314
94.6% 
84.8% 
/tmp/bioruby/lib/bio/db/aaindex.rb 357 357
68.9% 
58.0% 
/tmp/bioruby/lib/bio/db/embl/common.rb 336 336
91.1% 
83.8% 
/tmp/bioruby/lib/bio/db/embl/embl.rb 381 381
97.1% 
93.0% 
/tmp/bioruby/lib/bio/db/embl/sptr.rb 879 879
74.1% 
78.3% 
/tmp/bioruby/lib/bio/db/embl/uniprot.rb 43 43
97.7% 
100.0% 
/tmp/bioruby/lib/bio/db/fasta.rb 907 907
76.0% 
59.3% 
/tmp/bioruby/lib/bio/db/genbank/common.rb 299 299
33.1% 
15.0% 
/tmp/bioruby/lib/bio/db/genbank/ddbj.rb 34 34
100.0% 
100.0% 
/tmp/bioruby/lib/bio/db/genbank/genbank.rb 354 354
19.2% 
17.9% 
/tmp/bioruby/lib/bio/db/gff.rb 163 163
90.8% 
76.7% 
/tmp/bioruby/lib/bio/db/kegg/genes.rb 293 293
35.2% 
28.0% 
/tmp/bioruby/lib/bio/db/pdb.rb 41 41
97.6% 
100.0% 
/tmp/bioruby/lib/bio/db/pdb/atom.rb 93 93
88.2% 
66.7% 
/tmp/bioruby/lib/bio/db/pdb/chain.rb 216 216
56.9% 
28.5% 
/tmp/bioruby/lib/bio/db/pdb/model.rb 158 158
60.8% 
33.3% 
/tmp/bioruby/lib/bio/db/pdb/pdb.rb 1843 1843
76.0% 
69.6% 
/tmp/bioruby/lib/bio/db/pdb/residue.rb 186 186
74.7% 
46.3% 
/tmp/bioruby/lib/bio/db/pdb/utils.rb 415 415
59.5% 
24.2% 
/tmp/bioruby/lib/bio/db/prosite.rb 593 593
80.4% 
68.0% 
/tmp/bioruby/lib/bio/db/rebase.rb 413 413
97.3% 
94.8% 
/tmp/bioruby/lib/bio/feature.rb 226 226
92.0% 
80.0% 
/tmp/bioruby/lib/bio/io/ddbjxml.rb 624 624
66.0% 
20.6% 
/tmp/bioruby/lib/bio/io/ensembl.rb 262 262
79.4% 
38.2% 
/tmp/bioruby/lib/bio/io/fastacmd.rb 184 184
78.8% 
39.0% 
/tmp/bioruby/lib/bio/io/fetch.rb 181 181
82.3% 
32.4% 
/tmp/bioruby/lib/bio/io/flatfile.rb 1266 1266
46.4% 
17.5% 
/tmp/bioruby/lib/bio/io/soapwsdl.rb 93 93
91.4% 
80.6% 
/tmp/bioruby/lib/bio/location.rb 760 760
72.2% 
39.7% 
/tmp/bioruby/lib/bio/map.rb 315 315
79.0% 
55.3% 
/tmp/bioruby/lib/bio/pathway.rb 991 991
39.8% 
50.6% 
/tmp/bioruby/lib/bio/reference.rb 588 588
96.9% 
92.3% 
/tmp/bioruby/lib/bio/sequence.rb 475 475
66.5% 
29.4% 
/tmp/bioruby/lib/bio/sequence/aa.rb 125 125
99.2% 
100.0% 
/tmp/bioruby/lib/bio/sequence/common.rb 329 329
98.5% 
95.2% 
/tmp/bioruby/lib/bio/sequence/compat.rb 123 123
97.6% 
91.4% 
/tmp/bioruby/lib/bio/sequence/generic.rb 24 24
95.8% 
100.0% 
/tmp/bioruby/lib/bio/sequence/na.rb 418 418
99.5% 
99.2% 
/tmp/bioruby/lib/bio/shell.rb 37 37
94.6% 
100.0% 
/tmp/bioruby/lib/bio/shell/core.rb 517 517
30.0% 
17.1% 
/tmp/bioruby/lib/bio/shell/demo.rb 143 143
32.2% 
17.6% 
/tmp/bioruby/lib/bio/shell/interface.rb 216 216
26.4% 
9.4% 
/tmp/bioruby/lib/bio/shell/object.rb 52 52
42.3% 
35.7% 
/tmp/bioruby/lib/bio/shell/plugin/codon.rb 210 210
49.5% 
50.0% 
/tmp/bioruby/lib/bio/shell/plugin/emboss.rb 23 23
73.9% 
44.4% 
/tmp/bioruby/lib/bio/shell/plugin/entry.rb 94 94
50.0% 
36.4% 
/tmp/bioruby/lib/bio/shell/plugin/flatfile.rb 101 101
24.8% 
9.6% 
/tmp/bioruby/lib/bio/shell/plugin/keggapi.rb 174 174
23.0% 
17.9% 
/tmp/bioruby/lib/bio/shell/plugin/midi.rb 430 430
47.7% 
43.2% 
/tmp/bioruby/lib/bio/shell/plugin/obda.rb 45 45
46.7% 
21.4% 
/tmp/bioruby/lib/bio/shell/plugin/seq.rb 220 220
67.7% 
63.6% 
/tmp/bioruby/lib/bio/shell/web.rb 90 90
23.3% 
8.8% 
/tmp/bioruby/lib/bio/util/color_scheme.rb 214 214
99.1% 
97.0% 
/tmp/bioruby/lib/bio/util/color_scheme/buried.rb 78 78
100.0% 
100.0% 
/tmp/bioruby/lib/bio/util/color_scheme/nucleotide.rb 50 50
100.0% 
100.0% 
/tmp/bioruby/lib/bio/util/contingency_table.rb 343 343
99.7% 
100.0% 
/tmp/bioruby/lib/bio/util/restriction_enzyme.rb 242 242
97.5% 
83.3% 
/tmp/bioruby/lib/bio/util/restriction_enzyme/analysis.rb 378 378
98.4% 
97.1% 
/tmp/bioruby/lib/bio/util/restriction_enzyme/analysis/calculated_cuts.rb 220 220
100.0% 
100.0% 
/tmp/bioruby/lib/bio/util/restriction_enzyme/analysis/cut_range.rb 47 47
100.0% 
100.0% 
/tmp/bioruby/lib/bio/util/restriction_enzyme/analysis/cut_ranges.rb 50 50
100.0% 
100.0% 
/tmp/bioruby/lib/bio/util/restriction_enzyme/analysis/fragment.rb 82 82
100.0% 
100.0% 
/tmp/bioruby/lib/bio/util/restriction_enzyme/analysis/fragments.rb 64 64
100.0% 
100.0% 
/tmp/bioruby/lib/bio/util/restriction_enzyme/analysis/horizontal_cut_range.rb 75 75
90.7% 
82.8% 
/tmp/bioruby/lib/bio/util/restriction_enzyme/analysis/sequence_range.rb 231 231
93.5% 
91.9% 
/tmp/bioruby/lib/bio/util/restriction_enzyme/analysis/tags.rb 48 48
100.0% 
100.0% 
/tmp/bioruby/lib/bio/util/restriction_enzyme/analysis/vertical_cut_range.rb 73 73
89.0% 
81.2% 
/tmp/bioruby/lib/bio/util/restriction_enzyme/cut_symbol.rb 70 70
94.3% 
84.6% 
/tmp/bioruby/lib/bio/util/restriction_enzyme/double_stranded.rb 221 221
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